Journal: Horticulture Research

Article Title: Transcriptional dynamics of the developing sweet cherry ( Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes

doi: 10.1038/hortres.2014.11

Figure Lengend Snippet: Summary of all contigs. Contigs were assembled de novo from Illumina sequenced cDNA fragments generated from sweet cherry ‘Regina’ fruit sampled at different developmental stages. Group 1 and 3 were termed ‘high abundance’ and Group 2 ‘low abundance’ contigs, based on the number of mapped reads per contig; threshold 30 mapped reads per sample or 75 reads total in all 24 samples. Group 3 consists of contigs with BLASTn hits ( e -value <1× −100 ) to bacterial, viral, rRNA or other sources as described in the section on ‘Materials and methods’

Article Snippet: Directional complementary DNA (cDNA) libraries were prepared at the GenXPro GmbH (Frankfurt am Main, Germany).

Techniques: Generated